Here are some of the software products to come out of my research:
Search for public RNA-seq data within the Sequence Read Archive using biomedical ontologies.
- Website: http://metasra.biostat.wisc.edu
Standardize biomedical metadata that are encoded as key-value pairs.
Cell type classification of single-cell RNA-seq data against the Cell Ontology.
Explore cell type-specific gene expression signatures across the Cell Ontology.
Characterize and compare tumor subpopulations across public single-cell RNA-seq data.
Series Finder & Case-Control Finder
Build structured datasets of RNA-seq data from the Sequence Read Archive.