Posts by Collection



MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive

Published in Bioinformatics, 2017

The NCBI’s Sequence Read Archive (SRA) promises great biological insight if one could analyze the data in the aggregate; however, the data remain largely underutilized, in part, due to the poor structure of the metadata associated with each sample. We present MetaSRA, a database of normalized SRA human sample-specific metadata following a schema inspired by the metadata organization of the ENCODE project.

Download here



CS302 - Introduction to Programming

Course, University of Wisconsin - Madison, Department of Computer Sciences, 2013

A Java-based introduction to computer programming class taught in the Fall 2013 and Spring 2014 semesters.